Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph qiime2 Deblur detect/correct sequence data

Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-03-deblur.cwl

Branch/Commit ID: develop
workflow graph qiime2 demux sequences

Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-02-demux-emp-single.cwl

Branch/Commit ID: develop
workflow graph qiime2 demux paired sequences

https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-02-demux-emp-paired.cwl

Branch/Commit ID: develop
workflow graph qiime2 importing data

Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-01-import-data-single.cwl

Branch/Commit ID: develop
workflow graph qiime2 importing data

Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-01-import-data-paired.cwl

Branch/Commit ID: develop
workflow graph QIIME2 Step 3

QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting

https://github.com/bespin-workflows/16s-qiime2.git

Path: 16s-step3-alpha-beta-analysis.cwl

Branch/Commit ID: develop
workflow graph QIIME2 Step 1 paired end sequences

QIIME2 Import and Demux Step 1 paired end sequences

https://github.com/bespin-workflows/16s-qiime2.git

Path: 16s-step1-import-demux-paired.cwl

Branch/Commit ID: develop
workflow graph wf_demultiplex_se.cwl

This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol)

https://github.com/YeoLab/eclip.git

Path: cwl/wf_demultiplex_se.cwl

Branch/Commit ID: master
workflow graph Hello World

Outputs a message using echo

 https://github.com/idaks/cwl_modeling.git

Path: cwl_example_user_guide/wf_hello.cwl

Branch/Commit ID: master
workflow graph hi-c-processing-pairs.cwl

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs.cwl

Branch/Commit ID: dev2