Workflow: qiime2 demux paired sequences
Fetched 2024-05-18 13:03:01 GMT
Verified with cwltool version 3.1.20221201130942
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This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| sample_metadata | File | ||
| sequences_artifact | File | ||
| demux_sequences_filename | String | ||
| metadata_barcodes_column | String | ||
| rev_comp_mapping_barcodes | Boolean | ||
| demux_visualization_filename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| demux_sequences |
../tools/qiime2/demux-emp-paired.cwl
(CommandLineTool)
|
qiime2: Demultiplex paired-end sequence data for data generated with the Earth Microbiome Project (EMP) amplicon sequencing protocol | |
| demux_visualization |
../tools/qiime2/demux-summarize.cwl
(CommandLineTool)
|
qiime2: Summarize counts per sample for all samples, and generate interactive positional quality plots based on `n` randomly selected sequences |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| demux_sequences_artifact | File | ||
| demux_visualization_artifact | File |
Permalink:
https://w3id.org/cwl/view/git/a6a7d5bd034f8ccf01b809bc9f5ecf87e5c5652c/subworkflows/qiime2-02-demux-emp-paired.cwl
