Workflow: QIIME2 Step 3
Fetched 2024-05-18 16:45:35 GMT
Verified with cwltool version 3.1.20221201130942
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| table | File | ||
| rooted_tree | File | ||
| sample_metadata | File | ||
| output_filename_prefix | String | ||
| rarefied_table_filename | String | ||
| shannon_vector_filename | String | ||
| diversity_sampling_depth | Integer | ||
| evenness_vector_filename | String | ||
| faith_pd_vector_filename | String | ||
| jaccard_emperor_filename | String | ||
| bray_curtis_emperor_filename | String | ||
| jaccard_pcoa_results_filename | String | ||
| observed_otus_vector_filename | String | ||
| jaccard_distance_matrix_filename | String | ||
| bray_curtis_pcoa_results_filename | String | ||
| weighted_unifrac_emperor_filename | String | ||
| unweighted_unifrac_metadata_column | String | ||
| shannon_group_significance_filename | String | ||
| unweighted_unifrac_emperor_filename | String | ||
| bray_curtis_distance_matrix_filename | String | ||
| evenness_group_significance_filename | String | ||
| faith_pd_group_significance_filename | String | ||
| weighted_unifrac_pcoa_results_filename | String | ||
| unweighted_unifrac_pcoa_results_filename | String | ||
| unweighted_unifrac_significance_filename | String | ||
| weighted_unifrac_distance_matrix_filename | String | ||
| unweighted_unifrac_distance_matrix_filename | String | ||
| unweighted_unifrac_body_site_significance_filename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| alpha_beta_diversity | qiime2 diversity analyses |
Alpha and beta diversity analysis |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| rarefied_table | File | ||
| shannon_vector | File | ||
| evenness_vector | File | ||
| faith_pd_vector | File | ||
| jaccard_emperor | File | ||
| bray_curtis_emperor | File | ||
| jaccard_pcoa_results | File | ||
| observed_otus_vector | File | ||
| jaccard_distance_matrix | File | ||
| bray_curtis_pcoa_results | File | ||
| weighted_unifrac_emperor | File | ||
| unweighted_unifrac_emperor | File | ||
| bray_curtis_distance_matrix | File | ||
| weighted_unifrac_pcoa_results | File | ||
| shannon_group_significance_file | File | ||
| unweighted_unifrac_pcoa_results | File | ||
| evenness_group_significance_file | File | ||
| faith_pd_group_significance_file | File | ||
| weighted_unifrac_distance_matrix | File | ||
| unweighted_unifrac_distance_matrix | File | ||
| unweighted_unifrac_significance_file | File |
Permalink:
https://w3id.org/cwl/view/git/a6a7d5bd034f8ccf01b809bc9f5ecf87e5c5652c/16s-step3-alpha-beta-analysis.cwl
