Workflow: qiime2 importing data
Fetched 2024-05-18 14:07:15 GMT
Verified with cwltool version 3.1.20221201130942
Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/
- Selected
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- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| barcodes | File | ||
| forward_sequences | File | ||
| reverse_sequences | File | ||
| sequences_artifact_type | String | ||
| sequences_artifact_filename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| make_import_directory |
../tools/qiime2/EMPPairedEndSequences-directory.cwl
(CommandLineTool)
|
qiime2: Creates a directory populated with specifically named files as required by qiime2 EMPPairedEndSequences | |
| make_sequences_artifact |
../tools/qiime2/tools-import.cwl
(CommandLineTool)
|
qiime2: Import data to create a new QIIME 2 Artifact |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sequences_artifact | File |
Permalink:
https://w3id.org/cwl/view/git/a6a7d5bd034f8ccf01b809bc9f5ecf87e5c5652c/subworkflows/qiime2-01-import-data-paired.cwl
