Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Transcripts annotation workflow
|
https://github.com/stain/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-wf.cwl Branch/Commit ID: avoid-spaces |
|
|
|
wf_simulate_data_collection.cwl
|
https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/simulate_data_collection/wf_simulate_data_collection.cwl Branch/Commit ID: master |
|
|
|
dedup-3-pass.cwl
run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/dedup-3-pass.cwl Branch/Commit ID: master |
|
|
|
zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: develop |
|
|
|
tRNA_selection.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 0cd2d70 |
|
|
|
per_cluster_workflow.cwl
|
https://github.com/FarahZKhan/scalability-reproducibility-chapter.git
Path: CWL/per_cluster_workflow.cwl Branch/Commit ID: ProvCaptureDemo |
|
|
|
tRNA_selection.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 1b0851e |
|
|
|
wf_loopback.cwl
|
https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/loopback/wf_loopback.cwl Branch/Commit ID: master |
|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: No_filters_detect_variants |
|
|
|
realign-distr.cwl
|
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/realign-distr.cwl Branch/Commit ID: master |
