Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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pdf2wordcloud.cwl
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![]() Path: CWL/Workflows/pdf2wordcloud.cwl Branch/Commit ID: master |
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samtools_mpileup_subpipeline.cwl
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![]() Path: janis_pipelines/wgs_somatic/cwl/tools/samtools_mpileup_subpipeline.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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![]() Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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rRNA_selection.cwl
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![]() Path: tools/rRNA_selection.cwl Branch/Commit ID: 56dafa4 |
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wf_trim_and_map_pe.cwl
This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment |
![]() Path: cwl/wf_trim_and_map_pe.cwl Branch/Commit ID: master |
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5fb4c1087a8d46e7885c74e0e3d79d90.cwl
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![]() Path: .renku/workflow/5fb4c1087a8d46e7885c74e0e3d79d90.cwl Branch/Commit ID: master |
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star-cufflinks_wf_pe.cwl
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![]() Path: workflows/star-cufflinks/paired_end/star-cufflinks_wf_pe.cwl Branch/Commit ID: master |
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tophat2-cufflinks_wf_pe.cwl
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![]() Path: workflows/tophat2-cufflinks/paired_end/tophat2-cufflinks_wf_pe.cwl Branch/Commit ID: master |
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filtering.cwl
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![]() Path: setup/cwl/filtering.cwl Branch/Commit ID: dev |
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rw-flow.cwl
run multiple rw stages sequentially using earlier step output as later stage input_bam |
![]() Path: stage/rw-flow.cwl Branch/Commit ID: master |