Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exomeseq-gatk4/v2.0.3
Whole Exome Sequence analysis using GATK4 - v2.0.3 |
https://github.com/bespin-workflows/exomeseq-gatk4.git
Path: exomeseq-gatk4.cwl Branch/Commit ID: v2.0.3 |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: master |
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qc.cwl
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https://github.com/kinow/pipeline-v5.git
Path: workflows/conditionals/qc.cwl Branch/Commit ID: eosc-life-gos |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: develop |
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EMG pipeline v4.0 (paired end version)
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-paired.cwl Branch/Commit ID: master |
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VIRTUS.SE.singlevirus.cwl
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https://github.com/yyoshiaki/VIRTUS.git
Path: workflow/VIRTUS.SE.singlevirus.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: a8abd0e |
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rna amplicon analysis for fastq files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fastq.workflow.cwl Branch/Commit ID: master |
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main-somatic.cwl
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https://github.com/bcbio/test_bcbio_cwl.git
Path: somatic/somatic-workflow/main-somatic.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 1b0851e |
