Explore Workflows

Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/bespin-workflows/16s-qiime2.git

Path: subworkflows/qiime2-03-deblur.cwl

Branch/Commit ID: develop

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/marianas/collapsed_fastq_to_bam.cwl

Branch/Commit ID: master

The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples.

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_scatter_se.cwl

Branch/Commit ID: master

BAM filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl

Branch/Commit ID: 1.0.7

https://github.com/ReddyLab/bird-workflow.git

Path: 03_bird_scatter_values/bird_scatter_values.cwl

Branch/Commit ID: main

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/iwdr_with_nested_dirs.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/any-type-compat.cwl

Branch/Commit ID: main

https://github.com/puentesdiaz/workflows.git

Path: workflows/demo.cwl

Branch/Commit ID: master

Water bodies detection based on NDWI and otsu threshold

https://github.com/Terradue/ogc-eo-application-package-hands-on.git

Path: water-bodies/app-package.cwl

Branch/Commit ID: master

Packed ID: water_bodies

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: qa_check_subwf.cwl

Branch/Commit ID: master