Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph upload_results.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/utils/upload_results.cwl

Branch/Commit ID: master

workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: master

workflow graph per-sample.cwl

https://github.com/biosciencedbc/jga-analysis.git

Path: per-sample/Workflows/per-sample.cwl

Branch/Commit ID: main

workflow graph hi-c-processing-pairs.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs.cwl

Branch/Commit ID: master

workflow graph fasta2taxa-plot

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/cluster2plot.cwl

Branch/Commit ID: master

workflow graph mutect panel-of-normals workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/panel_of_normals.cwl

Branch/Commit ID: downsample_and_recall

workflow graph 03-map-se-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: SE - blacklist removal

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl

Branch/Commit ID: master

workflow graph haplotypecaller.cwl

https://github.com/biosciencedbc/jga-analysis.git

Path: per-sample/Workflows/haplotypecaller.cwl

Branch/Commit ID: main

workflow graph pipeline.cwl

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: c2c4f45

workflow graph ConcordanceTestWorkflow.cwl

https://github.com/DataBiosphere/topmed-workflows.git

Path: vcf-comparator/ConcordanceTestWorkflow.cwl

Branch/Commit ID: 1.30.0