Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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exome alignment with qc
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![]() Path: definitions/pipelines/alignment_exome.cwl Branch/Commit ID: low-vaf |
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bgzip and index VCF
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![]() Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: master |
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run-openfoam.cwl
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![]() Path: cwl/run-openfoam.cwl Branch/Commit ID: main |
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gdc_main_annotation_workflow.cwl
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![]() Path: v102/workflows/subworkflows/gdc_main_annotation_workflow.cwl Branch/Commit ID: master |
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Unaligned to aligned BAM
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![]() Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: align.cwl |
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Functional analyis of sequences that match the 16S SSU
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![]() Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 2104dc3 |
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Filter single sample sv vcf from paired read callers(Manta/Smoove)
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![]() Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl Branch/Commit ID: downsample_and_recall |
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bulk scRNA-seq pipeline using Salmon
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![]() Path: bulk-pipeline.cwl Branch/Commit ID: 69da10a |
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test_steps2.cwl
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![]() Path: test_steps2.cwl Branch/Commit ID: main |
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ROSE: rank ordering of super-enhancers
Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff) |
![]() Path: workflows/super-enhancer.cwl Branch/Commit ID: master |