Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	rnaseq-alignment-circRNA-multiple-samples This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/Alignments/star-alignment-circRNA-multiple-samples.cwl Branch/Commit ID: master
	02-trim-pe.cwl ChIP-seq 02 trimming - reads: PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: master
	collapsed_fastq_to_bam.cwl	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/marianas/collapsed_fastq_to_bam.cwl Branch/Commit ID: 0.0.33_dmp
	tRNA_selection.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/tRNA_selection.cwl Branch/Commit ID: 930a2cf
	Tumor-Only Detect Variants workflow	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: low-vaf
	pipeline-se-blacklist-removal.cwl ATAC-seq pipeline - reads: SE - with blacklist removal	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl Branch/Commit ID: master
	04-peakcall-pe.cwl ATAC-seq 04 quantification - PE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl Branch/Commit ID: v1.0
	QIIME2 Step 2 (Deblur option) QIIME2 Deblur, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom	https://github.com/Duke-GCB/bespin-cwl.git Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8 Packed ID: main
	bacterial_kmer	https://github.com/ncbi/pgap.git Path: bacterial_kmer/wf_bacterial_kmer.cwl Branch/Commit ID: dev
	salmon_wf_pe.cwl	https://github.com/pitagora-network/pitagora-cwl.git Path: workflows/salmon/paired_end/salmon_wf_pe.cwl Branch/Commit ID: master