Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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BLASTP, parse, dump FASTA
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![]() Path: blast-pipelines/simple_three_step.cwl Branch/Commit ID: master |
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wf_get_itrdb_data.cwl
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![]() Path: yw_cwl_modeling/yw2cwl_parser/example_sql/get_itrdb_data/wf_get_itrdb_data.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
![]() Path: annotator_sub_wf.cwl Branch/Commit ID: develop |
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tindaisy.cwl
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![]() Path: cwl/workflows/tindaisy.cwl Branch/Commit ID: master |
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presto_nosort.cwl
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![]() Path: presto_nosort.cwl Branch/Commit ID: visualise |
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env-wf3.cwl
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![]() Path: v1.0/v1.0/env-wf3.cwl Branch/Commit ID: master |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
![]() Path: prepare_user_input2.cwl Branch/Commit ID: 48381989cb983567ed936fde632714933df65350 |
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biowardrobe_chipseq_se.cwl
The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files. |
![]() Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master |
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bgzip and index VCF
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![]() Path: Dockstore.cwl Branch/Commit ID: master |
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topmed-alignment-checker.cwl
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![]() Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl Branch/Commit ID: cwlprov_testing |