Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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ProGENI
network-guided gene prioritization method implementation by KnowEnG that ranks gene measurements by their correlation to observed phenotypes |
![]() Path: gp_workflow.cwl Branch/Commit ID: master |
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etl_http.cwl
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![]() Path: workflows/dnaseq/etl_http.cwl Branch/Commit ID: master |
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example.cwl
Example CWL workflow that uses some advanced features |
![]() Path: cwl/example.cwl Branch/Commit ID: master |
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oxog_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
![]() Path: oxog_sub_wf.cwl Branch/Commit ID: develop |
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qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
![]() Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-03-dada2.cwl |
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EMG pipeline v3.0 (single end version)
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![]() Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5dc7c5c |
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split_bam_workflow.cwl
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![]() Path: workflows/subworkflows/split_bam_workflow.cwl Branch/Commit ID: master |
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Detect DoCM variants
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![]() Path: definitions/subworkflows/docm_germline.cwl Branch/Commit ID: bfcb5ffbea3d00a38cc03595d41e53ea976d599d |
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adapter for sequence_align_and_tag
Some workflow engines won't stage files in our nested structure, so parse it out here |
![]() Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl Branch/Commit ID: master |
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umi molecular alignment workflow
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![]() Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: downsample_and_recall |