Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph hi-c-processing-bam.cwl

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-bam.cwl

Branch/Commit ID: master

workflow graph Aseq pre-processing for the polyA pipeline

This workflow does pre-processing of Aseq data for the polyA pipeline. (*Citation needed*) Sequencing data are converted to fasta, checked for valid 5'' and 3'' ends and reverse complemented. Steps are: - gnu_zip fastq - fastq_to_fasta - rs-filter-by-5p-adapter.keep5pAdapter.pl - cutadapt - fastx_reverse_complement - gzip

https://github.com/ninsch3000/CWL_test_pAp.git

Path: workflows/cjh_polyA_prepro_WF1.1.cwl

Branch/Commit ID: master

workflow graph GATK-Sub-Workflow-h3abionet-snp.cwl

https://github.com/common-workflow-language/workflows.git

Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-snp.cwl

Branch/Commit ID: h3abionet-gatk-workflow

workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: a8abd0e

workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 1b0851e

workflow graph functional analysis prediction with InterProScan

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 71d9c83

workflow graph workflow_data.cwl

https://github.com/lukasheinrich/cwltests.git

Path: cwl/workflow_data.cwl

Branch/Commit ID: master

workflow graph list ZIP content by URL

curl will download a HTTP/HTTPS resource or file from a given URL, following any redirections.

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zip-content-by-url.cwl

Branch/Commit ID: a3ce8d810d16111d695a04316ef55671d2d38ee5

workflow graph hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl

https://github.com/rawgene/cwl.git

Path: workflows/hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl

Branch/Commit ID: master

workflow graph count-lines6-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines6-wf.cwl

Branch/Commit ID: master