Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	standard_pipeline.cwl This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2	https://github.com/andurill/ACCESS-Pipeline.git Path: workflows/standard_pipeline.cwl Branch/Commit ID: 0.0.33_dmp
	exome alignment and somatic variant detection	https://github.com/genome/cancer-genomics-workflow.git Path: somatic_exome_workflow.cwl Branch/Commit ID: toil_compatibility
	03-map-se.cwl ChIP-seq 03 mapping - reads: SE	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ChIP-seq_pipeline/03-map-se.cwl Branch/Commit ID: master
	bwa-mem-sort-distr.cwl	https://github.com/sentieon/sentieon-cwl.git Path: stage/bwa-mem-sort-distr.cwl Branch/Commit ID: master
	post-proccessing-go-pfam-stats-subwf.cwl	https://github.com/kinow/pipeline-v5.git Path: workflows/subworkflows/functional-annotation/post-proccessing-go-pfam-stats-subwf.cwl Branch/Commit ID: eosc-life-gos
	trim-rnaseq-se.cwl Runs RNA-Seq BioWardrobe basic analysis with single-end data file.	https://github.com/Barski-lab/workflows.git Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: master
	SSU-from-tablehits.cwl	https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: master
	bam_filtering BAM filtering	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 1.0.5
	scRNA-seq pipeline using Salmon and Alevin	https://github.com/hubmapconsortium/salmon-rnaseq.git Path: pipeline.cwl Branch/Commit ID: release
	EMG pipeline v3.0 (draft CWL version)	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 3168316