Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exome alignment with qc

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_exome.cwl

Branch/Commit ID: low-vaf

workflow graph bgzip and index VCF

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/bgzip_and_index.cwl

Branch/Commit ID: master

workflow graph run-openfoam.cwl

https://github.com/chgarth/cwl-openfoam.git

Path: cwl/run-openfoam.cwl

Branch/Commit ID: main

workflow graph gdc_main_annotation_workflow.cwl

https://github.com/NCI-GDC/vep-cwl.git

Path: v102/workflows/subworkflows/gdc_main_annotation_workflow.cwl

Branch/Commit ID: master

workflow graph Unaligned to aligned BAM

https://github.com/markrobbo/workflows.git

Path: workflows/hello/exome_alignment_packed.cwl

Branch/Commit ID: master

Packed ID: align.cwl

workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: 2104dc3

workflow graph Filter single sample sv vcf from paired read callers(Manta/Smoove)

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/sv_paired_read_caller_filter.cwl

Branch/Commit ID: downsample_and_recall

workflow graph bulk scRNA-seq pipeline using Salmon

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: bulk-pipeline.cwl

Branch/Commit ID: 69da10a

workflow graph test_steps2.cwl

https://github.com/MGuevaraO/cwl_test.git

Path: test_steps2.cwl

Branch/Commit ID: main

workflow graph ROSE: rank ordering of super-enhancers

Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff)

https://github.com/datirium/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: master