Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	BLASTP, parse, dump FASTA	https://github.com/ncbi/cwl-demos.git Path: blast-pipelines/simple_three_step.cwl Branch/Commit ID: master
	wf_get_itrdb_data.cwl	https://github.com/idaks/cwl_modeling.git Path: yw_cwl_modeling/yw2cwl_parser/example_sql/get_itrdb_data/wf_get_itrdb_data.cwl Branch/Commit ID: master
	annotator_sub_wf.cwl This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!	https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git Path: annotator_sub_wf.cwl Branch/Commit ID: develop
	tindaisy.cwl	https://github.com/ding-lab/TinDaisy.git Path: cwl/workflows/tindaisy.cwl Branch/Commit ID: master
	presto_nosort.cwl	https://github.com/eosc-lofar/presto-cwl.git Path: presto_nosort.cwl Branch/Commit ID: visualise
	env-wf3.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/env-wf3.cwl Branch/Commit ID: master
	Prepare user input Prepare user input for NCBI-PGAP pipeline	https://github.com/ncbi/pgap.git Path: prepare_user_input2.cwl Branch/Commit ID: 48381989cb983567ed936fde632714933df65350
	biowardrobe_chipseq_se.cwl The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.	https://github.com/agduncan94/ga4gh_challenge.git Path: biowardrobe_chipseq_se.cwl Branch/Commit ID: master
	bgzip and index VCF	https://github.com/acoffman/dockstore-test.git Path: Dockstore.cwl Branch/Commit ID: master
	topmed-alignment-checker.cwl	https://github.com/FarahZKhan/topmed-workflows.git Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl Branch/Commit ID: cwlprov_testing