Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	upload_results.cwl	https://github.com/uc-cdis/genomel_pipelines.git Path: genomel/cwl/workflows/utils/upload_results.cwl Branch/Commit ID: master
	Functional analyis of sequences that match the 16S SSU	https://github.com/farahzkhan/ebi-metagenomics-cwl.git Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: master
	per-sample.cwl	https://github.com/biosciencedbc/jga-analysis.git Path: per-sample/Workflows/per-sample.cwl Branch/Commit ID: main
	hi-c-processing-pairs.cwl	https://github.com/mr-c/4dn-dcic-pipelines-cwl.git Path: cwl_awsem_v1/hi-c-processing-pairs.cwl Branch/Commit ID: master
	fasta2taxa-plot Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.	https://github.com/MG-RAST/qiime-pipeline.git Path: CWL/Workflows/qiime/cluster2plot.cwl Branch/Commit ID: master
	mutect panel-of-normals workflow	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/pipelines/panel_of_normals.cwl Branch/Commit ID: downsample_and_recall
	03-map-se-blacklist-removal.cwl ATAC-seq 03 mapping - reads: SE - blacklist removal	https://github.com/alexbarrera/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/03-map-se-blacklist-removal.cwl Branch/Commit ID: master
	haplotypecaller.cwl	https://github.com/biosciencedbc/jga-analysis.git Path: per-sample/Workflows/haplotypecaller.cwl Branch/Commit ID: main
	pipeline.cwl	https://github.com/hubmapconsortium/azimuth-annotate.git Path: pipeline.cwl Branch/Commit ID: c2c4f45
	ConcordanceTestWorkflow.cwl	https://github.com/DataBiosphere/topmed-workflows.git Path: vcf-comparator/ConcordanceTestWorkflow.cwl Branch/Commit ID: 1.30.0