Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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standard_pipeline.cwl
This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2 |
https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/standard_pipeline.cwl Branch/Commit ID: 0.0.33_dmp |
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exome alignment and somatic variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: somatic_exome_workflow.cwl Branch/Commit ID: toil_compatibility |
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03-map-se.cwl
ChIP-seq 03 mapping - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/03-map-se.cwl Branch/Commit ID: master |
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bwa-mem-sort-distr.cwl
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https://github.com/sentieon/sentieon-cwl.git
Path: stage/bwa-mem-sort-distr.cwl Branch/Commit ID: master |
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post-proccessing-go-pfam-stats-subwf.cwl
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https://github.com/kinow/pipeline-v5.git
Path: workflows/subworkflows/functional-annotation/post-proccessing-go-pfam-stats-subwf.cwl Branch/Commit ID: eosc-life-gos |
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trim-rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: master |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 1.0.5 |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: release |
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EMG pipeline v3.0 (draft CWL version)
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 3168316 |