Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph main.cwl

SMC-RNA challenge fusion detection submission FusionRnadt workflow: gunzip, indexing, fusion count, gene-fusion detection

https://github.com/smc-rna-challenge/tnv-8289993.git

Path: main.cwl

Branch/Commit ID: master

workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 1.0.0

workflow graph cram_realign_workflow.cwl

https://github.com/RyanHausler/CWL_workflow.git

Path: cram_realign_workflow.cwl

Branch/Commit ID: master

workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: d3b8e45

workflow graph metaphlan

See the [Metaphlan](https://bitbucket.org/biobakery/metaphlan2) website for more information.

https://github.com/stevetsa/Metaphlan-ISBCGC.git

Path: metaphlan_wfl.cwl

Branch/Commit ID: master

workflow graph packed.cwl#wflow_all_mc.cwl

https://github.com/mr-c/cwltests.git

Path: cwl/packed.cwl

Branch/Commit ID: pack_test

Packed ID: wflow_all_mc.cwl

workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 930a2cf

workflow graph A CGP workflow to generate checksum of an interleaved fastq

A workflow to generate checksums of FastQ files and a interleaved FastQ from them. See the [workflow-seq-import](https://github.com/cancerit/workflow-seq-import) website for more information.

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: 0.4.0

workflow graph scatter GATK HaplotypeCaller over intervals

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl

Branch/Commit ID: dc2c019c1aa24cc01b451a0f048cf94a35f163c4

workflow graph count-lines4-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl

Branch/Commit ID: 9e7c68c0834645ba53a7e2b5f70d53df9d051c92