Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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waltz-workflow.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/waltz/waltz-workflow.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
|
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 5dc7c5c |
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wf_fastqc.cwl
This workflow takes in single-end reads, and performs the following steps in order: demux_se.cwl (does not actually demux for single end, but mirrors the paired-end processing protocol) |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_fastqc.cwl Branch/Commit ID: master |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
https://gitlab.com/r78v10a07/cwl-workflow.git
Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: ca6ca61 |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: master |
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wflow_all_mc.cwl
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https://github.com/mr-c/cwltests.git
Path: cwl/wflow_all_mc.cwl Branch/Commit ID: pack_test |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-fastq.workflow.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: master |
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createindex.cwl
|
https://github.com/yyoshiaki/VIRTUS.git
Path: workflow/createindex.cwl Branch/Commit ID: master |