Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Dockstore.cwl

Testing: align sequences with bwa mem, then convert ot BAM

 https://github.com/standage/FirstCWLWorkflow.git

Path: Dockstore.cwl

Branch/Commit ID: master
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: downsample_and_recall
workflow graph bulk scRNA-seq pipeline using Salmon

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: bulk-pipeline.cwl

Branch/Commit ID: b9c8e26
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 56dafa4
workflow graph sc_atac_seq_initial_analysis.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: 68e0cc1
workflow graph Varscan Workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/varscan_germline.cwl

Branch/Commit ID: downsample_and_recall
workflow graph upload_results_workflow.cwl

https://github.com/nci-gdc/htseq-cwl.git

Path: workflows/subworkflows/upload_results_workflow.cwl

Branch/Commit ID: master
workflow graph Alignment without BQSR

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_to_bqsr_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Optical throughput measurements via muon ring analysis

Upon receiving a new DL0 data product (from either Monte Carlo simulations or observations), DPPS triggers the CalibPipe (ctapipe-process) to process the data using ctapipe, extracting the signal charges and reconstructing muon parameters. The second step involves using the CalibPipe tool to estimate the telescope’s optical throughput using a predefined number of muon events.

https://github.com/burmist-git/076_cwl.git

Path: uc-120-2.2-optical-throughput-calibration-with-muons.cwl

Branch/Commit ID: master
workflow graph validate_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/validate_interleaved_fq.cwl

Branch/Commit ID: 0.3.2