Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph pipeline.cwl

https://github.com/nlesc-sherlock/deeplearning.git

Path: CWLworkflow/pipeline.cwl

Branch/Commit ID: master
workflow graph STAR-RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq_star_fusion.cwl

Branch/Commit ID: master
workflow graph Identifies non-coding RNAs using Rfams covariance models

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/cmsearch-multimodel-wf.cwl

Branch/Commit ID: assembly
workflow graph wf-svcall.cwl

https://github.com/garyluu/bcbio_validation_workflows.git

Path: wes-agha-test/wes_chr21_test-workflow-gcp/wf-svcall.cwl

Branch/Commit ID: master
workflow graph qiime2 demux paired sequences

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step1-import-demux-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-02-demux-emp-paired.cwl
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: low-vaf
workflow graph DeriveArrayElementCoordinates

Derive array element coordinates in the simulation pipeline coordinate system.

 https://github.com/gammasim/workflows.git

Path: workflows/DeriveArrayElementCoordinates.cwl

Branch/Commit ID: main
workflow graph chksum_for_a_corrupted_xam_file.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_a_corrupted_xam_file.cwl

Branch/Commit ID: master
workflow graph pipeline_cavatica.cwl

https://github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq.git

Path: pipeline_cavatica.cwl

Branch/Commit ID: main
workflow graph sar_coherence_parallel_test.cwl#main

Parallel InSAR coherence workflow: 1. Generate InSAR pairs from input date range and burst parameters 2. Process each pair in parallel (scatter) 2. STAC results (removed for now)

https://github.com/jzvolensky/s1-workflows.git

Path: cwl/sar_coherence_parallel_test.cwl

Branch/Commit ID: coherence_parallel_refactor

Packed ID: main