Workflow: make_search_pair_workflow.cwl
Fetched 2024-05-07 08:17:25 GMT
Verified with cwltool version 3.1.20221201130942
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- |
- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU General Public License v3.0 only
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| protein | File [plain text format (unformatted)] | ||
| contig_region | File [plain text format (unformatted)] | ||
| all_contig_fasta | File [FASTA] | ||
| all_protein_fasta | File [FASTA] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| extract_contig |
tools/samtools_faidx_extract.cwl
(CommandLineTool)
|
||
| extract_protein |
tools/samtools_faidx_extract.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| contig_fasta | File [format] | ||
| protein_fasta | File [format] |
Permalink:
https://w3id.org/cwl/view/git/0ed49ec431ed0fdb481231b47c19d939d29c58c6/make_search_pair_workflow.cwl
