Workflow: dedup-2-pass.cwl
run 2-pass dedup: algo LocusCollector + algo Dedup sequentially
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
BSD 2-clause "Simplified" License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
threads | Integer (Optional) | ||
interval | File (Optional) | ||
input_bam | File[] | ||
reference | File (Optional) | ||
output_file | String | ||
traverse_param | String (Optional) | ||
bam_compression | Integer (Optional) | ||
advanced_options | |||
metrics_output_file | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
dedup |
../algo/dedup.cwl
(CommandLineTool)
|
||
dedup_pre |
../algo/dedup_pre.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
output | File | ||
metrics_output | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/d20382adfe7285cb517a25d95d2bcb7586546e23/stage/dedup-2-pass.cwl