Workflow: workflow.cwl
Fetched 2024-11-28 22:32:06 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| in_table | File (Optional) | ||
| url_string | String | ||
| in_cds_fasta | File (Optional) | ||
| url_cds_fasta | String[] | ||
| in_genomic_gff | File (Optional) | ||
| path_cds_fasta | File (Optional) | ||
| url_table_file | String[] | ||
| in_md5checksums | File (Optional) | ||
| url_genomic_gff | String[] | ||
| in_genomic_fasta | File (Optional) | ||
| in_protein_fasta | File (Optional) | ||
| path_genomic_gff | File (Optional) | ||
| url_genomic_fasta | String[] | ||
| url_protein_fasta | String[] | ||
| path_genomic_fasta | File (Optional) | ||
| path_protein_fasta | File (Optional) | ||
| in_transcript_fasta | File (Optional) | ||
| url_transcript_fasta | String[] | ||
| path_transcript_fasta | File (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| gunzip_table |
gunzip_single.cwl
(CommandLineTool)
|
||
| gunzip_cds_fasta |
gunzip_single.cwl
(CommandLineTool)
|
||
| check_md5checksums |
check_md5checksums.cwl
(CommandLineTool)
|
||
| gunzip_genomic_gff |
gunzip_single.cwl
(CommandLineTool)
|
||
| extract_md5checksums |
extract_md5checksums.cwl
(CommandLineTool)
|
||
| gunzip_genomic_fasta |
gunzip_single.cwl
(CommandLineTool)
|
||
| gunzip_protein_fasta |
gunzip_single.cwl
(CommandLineTool)
|
||
| gunzip_transcript_fasta |
gunzip_single.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| OUT_check | File | ||
| OUT_table | File | ||
| OUT_extract | File | ||
| OUT_cds_fasta | File | ||
| OUT_genomic_gff | File | ||
| OUT_genomic_fasta | File | ||
| OUT_protein_fasta | File | ||
| OUT_transcript_fasta | File |
Permalink:
https://w3id.org/cwl/view/git/556884e8e205295e561b1d9140d836cdd6c1d8c9/flow_md5checksums/workflow.cwl
