Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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tmb_workflow.cwl
Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/tmb_workflow.cwl Branch/Commit ID: master |
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Immunotherapy Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/immuno.cwl Branch/Commit ID: master |
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sc_atac_seq_process_and_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/sc_atac_seq_process_and_analyze.cwl Branch/Commit ID: develop |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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exome alignment and germline variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/germline_detect_variants.cwl Branch/Commit ID: toil_compatibility |
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02-trim-pe.cwl
ATAC-seq 02 trimming - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: v1.0.0 |
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stage_data_workflow.cwl
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https://github.com/nci-gdc/htseq-cwl.git
Path: workflows/subworkflows/stage_data_workflow.cwl Branch/Commit ID: master |
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BLAST against rRNA db
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https://github.com/slottad/pgap.git
Path: bacterial_noncoding/wf_blastn.cwl Branch/Commit ID: master |
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samtools_view_sam2bam
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 1.0.9 |
