Workflow: BLAST against rRNA db
Fetched 2024-05-21 03:04:44 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| seqids | File | ||
| blastdb | String | ||
| outname | String | ||
| asn_cache | Directory | ||
| blastdb_dir | Directory | ||
| product_name | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| align_merge |
align_merge.cwl
(CommandLineTool)
|
Merge rRNA Alignments | |
| gpx_qsubmit |
gpx_qsubmit_blastn.cwl
(CommandLineTool)
|
BLAST against rRNA db, scatter | |
| blastn_wnode |
blastn_wnode.cwl
(CommandLineTool)
|
BLAST against rRNA db, execution | |
| gpx_make_outputs |
gpx_make_outputs.cwl
(CommandLineTool)
|
BLAST against rRNA db, gather | |
| ribosomal_align2annot |
ribosomal_align2annot.cwl
(CommandLineTool)
|
Generate rRNA Annotation |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| asncache | Directory | ||
| annotations | File |
Permalink:
https://w3id.org/cwl/view/git/21baa197e2c87a71e48794cef96d24c52518a99c/bacterial_noncoding/wf_blastn.cwl
