- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
bam_uuid | String | ||
gtf_uuid | String | ||
bioclient_config | File | ||
gene_lengths_uuid | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
extract_bam |
../../tools/bioclient_download.cwl
(CommandLineTool)
|
||
extract_gtf |
../../tools/bioclient_download.cwl
(CommandLineTool)
|
||
extract_gene_lengths |
../../tools/bioclient_download.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
bam | File | ||
gtf | File | ||
gene_lengths | File |
Permalink:
https://w3id.org/cwl/view/git/1ba6b619154cf892c45dec3977fbd25153bcebab/workflows/subworkflows/stage_data_workflow.cwl