Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Averages and aligns the unampped instances

First computes average per UniProt domain instance and then aligns all the average structures against core average structure. Outputs the alignment results along with the structures passing and failing the threshold for given Kpax score.

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/unmapped_unp_avg_align.cwl

Branch/Commit ID: main
workflow graph gathered exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_gathered.cwl

Branch/Commit ID: master
workflow graph Immunotherapy Workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/immuno.cwl

Branch/Commit ID: low-vaf
workflow graph Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass2.cwl

Branch/Commit ID: test
workflow graph 03-map-pe.cwl

ATAC-seq 03 mapping - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: master
workflow graph Scattered variant calling workflow

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/scatter-gatk-wf-with-interval.cwl

Branch/Commit ID: main
workflow graph apply_cal.cwl

https://github.com/peijin94/LOFAR-Sun-tools.git

Path: utils/IM/LINC/lincSun/workflow/apply_cal.cwl

Branch/Commit ID: master
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: master
workflow graph main-somatic.cwl

https://github.com/bcbio/test_bcbio_cwl.git

Path: somatic/somatic-workflow/main-somatic.cwl

Branch/Commit ID: master