Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: assembly |
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Exome QC workflow
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https://github.com/mnneveau/cancer-genomics-workflow.git
Path: qc/workflow_exome.cwl Branch/Commit ID: master |
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gatk-4.0.0.0-haplotypecaller.cwl
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https://github.com/wtsi-hgi/arvados-pipelines.git
Path: cwl/workflows/gatk-4.0.0.0-haplotypecaller.cwl Branch/Commit ID: master |
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CWL-RNAseq.cwl
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https://github.com/junyussh/RunningWorkflows-on-the-GoogleCloud.git
Path: CWL-RNAseq/CWL-RNAseq.cwl Branch/Commit ID: master |
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abra_workflow.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/ABRA/abra_workflow.cwl Branch/Commit ID: master |
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flagging.cwl
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https://github.com/ska-sa/den.git
Path: cwl/workflows/flagging.cwl Branch/Commit ID: kat7-test |
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exomeseq-01-preprocessing.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-01-preprocessing.cwl Branch/Commit ID: master |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: develop |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/david4096/OxoG-Dockstore-Tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: develop |
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wf_workflow.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/workflow/wf_workflow.cwl Branch/Commit ID: master |
