Workflow: cmsearch-multimodel.cwl

Fetched 2022-01-20 14:16:24 GMT
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Inputs

ID Type Title Doc
clan_info File
query_sequences File
covariance_models File[]

Steps

ID Runs Label Doc
remove_overlaps
../tools/cmsearch-deoverlap.cwl (CommandLineTool)
remove lower scoring overlaps from cmsearch --tblout files.

https://github.com/nawrockie/cmsearch_tblout_deoverlap/blob/master/00README.txt

cmsearch
../tools/infernal-cmsearch.cwl (CommandLineTool)
search sequence(s) against a covariance model database

http://eddylab.org/infernal/Userguide.pdf

concatenate_matches
../tools/concatenate.cwl (CommandLineTool)

Outputs

ID Type Label Doc
matches File
Permalink: https://w3id.org/cwl/view/git/7bb76f33bf40b5cd2604001cac46f967a209c47f/workflows/cmsearch-multimodel.cwl