Workflow: pileups_workflow.cwl
Fetched 2025-05-05 20:18:03 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| locations | File | ||
| alignments | File | ||
| genome_file | File | ||
| mpileup_depth | Integer | ||
| replicate_name | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| samtools |
samtools_mpileup/samtools_mpileup.cwl
(CommandLineTool)
|
||
| ref_counts |
ref_counts/ref_counts.cwl
(CommandLineTool)
|
||
| parse_pileup |
parse_pileup/parse_pileup.cwl
(CommandLineTool)
|
||
| filter_unknown_ref_base |
filter_unknown_ref_base/filter_unknown_ref_base.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| ref_count_file | File |
Permalink:
https://w3id.org/cwl/view/git/5e08b9b8a0323a1f4740a65bdb356e9b75074093/01_mpileups/pileups_workflow.cwl
