Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph ChIPseq_spike_in.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/ChIPseq_spike_in.cwl

Branch/Commit ID: master
workflow graph functional analysis prediction with InterProScan

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 1b0851e
workflow graph fasta2taxa-plot

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/cluster2plot.cwl

Branch/Commit ID: master
workflow graph grep-and-count.cwl

https://github.com/yonesora56/togotv_cwl_for_remote_container.git

Path: zatsu_cwl/grep-and-count.cwl

Branch/Commit ID: master
workflow graph ACTseq_spike_in.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/ACTseq_spike_in.cwl

Branch/Commit ID: master
workflow graph call_cnv.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/subworkflows/call_cnv.cwl

Branch/Commit ID: master
workflow graph 02-trim-pe.cwl

ATAC-seq 02 trimming - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: master
workflow graph basename-fields-test.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/basename-fields-test.cwl

Branch/Commit ID: main
workflow graph group-isoforms-batch.cwl

Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored.

https://github.com/Barski-lab/workflows.git

Path: tools/group-isoforms-batch.cwl

Branch/Commit ID: master
workflow graph qc_workflow.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/QC/qc_workflow.cwl

Branch/Commit ID: master