- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
alignment_rec | https://w3id.org/cwl/view/git/595f6f0a59b937a862f79378fbb19ef1653dca90/wes-agha-test/wes_chr21_test-workflow-gcp/wf-alignment.cwl#alignment_rec/alignment_rec |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
prep_align_inputs |
steps/prep_align_inputs.cwl
(CommandLineTool)
|
||
process_alignment |
steps/process_alignment.cwl
(CommandLineTool)
|
||
merge_split_alignments |
steps/merge_split_alignments.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
align_bam | File (Optional) | ||
hla__fastq | File[] (Optional) | ||
work_bam_plus__sr | File (Optional) | ||
work_bam_plus__disc | File (Optional) |
Permalink:
https://w3id.org/cwl/view/git/595f6f0a59b937a862f79378fbb19ef1653dca90/wes-agha-test/wes_chr21_test-workflow-gcp/wf-alignment.cwl