Workflow: wf_vecscreen.cwl
Fetched 2024-04-23 06:27:17 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pipelines/master/LICENSE
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| query | File | ||
| euk_adapt | https://w3id.org/cwl/view/git/7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf/contam_filter/typedefs.yaml#BlastnType | ||
| prok_adapt | https://w3id.org/cwl/view/git/7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf/contam_filter/typedefs.yaml#BlastnType | ||
| karyot_type | https://w3id.org/cwl/view/git/7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf/contam_filter/typedefs.yaml#KaryotType |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| filter |
wf_vecscreen.cwl#filter/a7e574ed-b06a-4c2b-8199-e96aa675c25b
(CommandLineTool)
|
||
| vecscreen |
vecscreen.cwl
(CommandLineTool)
|
||
| choose_adapt |
wf_vecscreen.cwl#choose_adapt/6631bc4e-b385-430f-9b04-e3f3314bdd1a
(ExpressionTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/7a5fae087e42ec7d2bfdf3f88ba2ea1e8fdc9ddf/contam_filter/wf_vecscreen.cwl
