Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Optical throughput measurements via muon ring analysis

Upon receiving a new DL0 data product (from either Monte Carlo simulations or observations), DPPS triggers the CalibPipe (ctapipe-process) to process the data using ctapipe, extracting the signal charges and reconstructing muon parameters. The second step involves using the CalibPipe tool to estimate the telescope’s optical throughput using a predefined number of muon events.

https://github.com/burmist-git/076_cwl.git

Path: uc-120-2.2-optical-throughput-calibration-with-muons.cwl

Branch/Commit ID: master
workflow graph workflow_vs.cwl

https://github.com/sapojnik/av_screen_x.git

Path: progs/workflow_vs.cwl

Branch/Commit ID: main
workflow graph downsample unaligned BAM and align

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/downsampled_alignment.cwl

Branch/Commit ID: downsample_and_recall
workflow graph chksum_seqval_wf_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: 0.3.0
workflow graph databkgmc.cwl

https://github.com/mr-c/cwltests.git

Path: cwl/databkgmc.cwl

Branch/Commit ID: pack_test
workflow graph Quality assessment, amplicon classification

Workflow for quality assessment of paired reads and classification using NGTax 2.0. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Export module

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_ngtax.cwl

Branch/Commit ID: master
workflow graph Compute average of average for core domain instances

Compute average structure for all averaged structures corresponding to core UniProt domain instances. First computes average per UniProt domain instance and then average all averaged structures.

https://github.com/HrishiDhondge/CroMaSt.git

Path: Tools/core_avg_subwf.cwl

Branch/Commit ID: main
workflow graph wf-alignment.cwl

https://github.com/BD2KGenomics/toil-workflows.git

Path: NA12878-platinum-chr20-workflow/wf-alignment.cwl

Branch/Commit ID: master
workflow graph bwa_index

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/bwa_index.cwl

Branch/Commit ID: master
workflow graph bams2gvcf.woBQSR_male.multisamples.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_male.multisamples.cwl

Branch/Commit ID: master