Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: dev |
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Varscan Workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/workflow.cwl Branch/Commit ID: toil_compatibility |
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exomeseq-gatk4-01-preprocessing.cwl
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https://github.com/bespin-workflows/exomeseq-gatk4.git
Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl Branch/Commit ID: v2.0.3 |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3f85843 |
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record-in-secondaryFiles-missing-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/record-in-secondaryFiles-missing-wf.cwl Branch/Commit ID: main |
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exomeseq.cwl#exomeseq-01-preprocessing.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/exomeseq.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: exomeseq-01-preprocessing.cwl |
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Bisulfite QC tools
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: downsample_and_recall |
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qiime2 Deblur detect/correct sequence data
Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-03-deblur.cwl |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: toil_compatibility |
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ST520104.cwl
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https://github.com/Marco-Salvi/cwl-test.git
Path: wf5201/ST520104.cwl Branch/Commit ID: main |
