Workflow: repliseq-parta.cwl
Fetched 2024-04-20 07:28:59 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fastq | File | ||
| winsize | Integer | ||
| bwaIndex | File | ||
| nthreads | Integer | ||
| chromsizes | File | ||
| memperthread | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| clip |
clip.cwl
(CommandLineTool)
|
||
| align |
align.cwl
(CommandLineTool)
|
||
| count |
count.cwl
(CommandLineTool)
|
||
| dedup |
dedup.cwl
(CommandLineTool)
|
||
| filtersort |
filtersort.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| count_bg | File | ||
| dedup_qc_report | File | ||
| filtered_sorted_deduped_bam | File |
Permalink:
https://w3id.org/cwl/view/git/91d67820264c8ebac829174cb1d0c7c5e30c613f/cwl_awsem_v1/repliseq/repliseq-parta.cwl
