Workflow: protein_evidence_mapping.cwl
Fetched 2024-04-25 23:54:19 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
GNU General Public License v3.0 only
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| contigs_fasta | File [FASTA] | ||
| species_table | String | ||
| proteins_fasta | File [FASTA] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| spaln |
tools/spaln.cwl
(CommandLineTool)
|
||
| metaeuk |
tools/metaeuk_easy_predict.cwl
(CommandLineTool)
|
||
| extract_region_pairs |
make_search_pair_workflow.cwl
(Workflow)
|
||
| extract_region_specs |
tools/metaeuk_to_regions.cwl
(CommandLineTool)
|
||
| process_spaln_output |
tools/process_spaln_output.cwl
(CommandLineTool)
|
||
| samtools_index_contigs |
tools/samtools_faidx.cwl
(CommandLineTool)
|
||
| samtools_index_protein |
tools/samtools_faidx.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| spaln_out | File |
Permalink:
https://w3id.org/cwl/view/git/0ed49ec431ed0fdb481231b47c19d939d29c58c6/protein_evidence_mapping.cwl
