Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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fastq2fasta.cwl
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https://github.com/hpobio-lab/viral-analysis.git
Path: cwl/fastq2fasta/fastq2fasta.cwl Branch/Commit ID: master |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: No_filters_detect_variants |
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wf_full_IDR_pipeline_1input.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input total for both reps, 1 IP each replicate). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_1input.cwl Branch/Commit ID: master |
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Run pindel on provided region
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: downsample_and_recall |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: master |
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samtools_sort
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/samtools_sort.cwl Branch/Commit ID: 1.0.5 |
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chksum_seqval_wf_paired_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: 0.2.3 |
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wf-jointcall.cwl
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https://github.com/bcbio/bcbio_validation_workflows.git
Path: giab-joint/giab-joint-workflow/wf-jointcall.cwl Branch/Commit ID: master |
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bulk_process.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/bulk_process.cwl Branch/Commit ID: develop |
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oxog_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/svonworl/OxoG-Dockstore-Tools.git
Path: oxog_sub_wf.cwl Branch/Commit ID: master |
