Workflow: etl_http.cwl

Fetched 2020-07-14 17:22:54 GMT
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Inputs

ID Type Title Doc
job_uuid String
reference_dict_file_size Long
reference_fai_gdc_id String
known_snp_index_gdc_id String
reference_fai_file_size Long
known_snp_gdc_id String
input_bam_gdc_id String
reference_bwt_file_size Long
reference_amb_file_size Long
reference_dict_gdc_id String
input_bam_file_size Long
reference_sa_file_size Long
gdc_token File
reference_amb_gdc_id String
reference_fa_file_size Long
known_snp_file_size Long
reference_ann_gdc_id String
reference_bwt_gdc_id String
reference_pac_gdc_id String
reference_ann_file_size Long
reference_pac_file_size Long
reference_fa_gdc_id String
known_snp_index_file_size Long
thread_count Long
reference_sa_gdc_id String

Steps

ID Runs Label Doc
extract_reference_sa
../../tools/gdc_get_object.cwl (CommandLineTool)
extract_reference_dict
../../tools/gdc_get_object.cwl (CommandLineTool)
root_known_snp_files
../../tools/root_vcf.cwl (CommandLineTool)
extract_reference_fa
../../tools/gdc_get_object.cwl (CommandLineTool)
extract_reference_fai
../../tools/gdc_get_object.cwl (CommandLineTool)
root_fasta_files
../../tools/root_fasta_dnaseq.cwl (CommandLineTool)
extract_reference_pac
../../tools/gdc_get_object.cwl (CommandLineTool)
extract_known_snp
../../tools/gdc_get_object.cwl (CommandLineTool)
transform
transform.cwl (Workflow)
extract_reference_amb
../../tools/gdc_get_object.cwl (CommandLineTool)
extract_bam
../../tools/gdc_get_object.cwl (CommandLineTool)
extract_reference_bwt
../../tools/gdc_get_object.cwl (CommandLineTool)
extract_reference_ann
../../tools/gdc_get_object.cwl (CommandLineTool)
extract_known_snp_index
../../tools/gdc_get_object.cwl (CommandLineTool)

Outputs

ID Type Label Doc
sqlite File
bam File
Permalink: https://w3id.org/cwl/view/git/58af8583ab04b8836777745a2116a2e79f9b441b/workflows/dnaseq/etl_http.cwl