Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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04-quantification-pe-stranded.cwl
RNA-seq 04 quantification |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl Branch/Commit ID: master |
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combine_counts.cwl
Combines read counts (generated by the 01_mpileups workflow) from multiple files into one file. |
https://github.com/reddylab/bird-workflow.git
Path: 02_combine_counts/combine_counts.cwl Branch/Commit ID: main |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: f914942 |
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calculate_contamination_workflow.cwl
GATK4.1.2 Calculate tumor-normal contamination workflow |
https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: subworkflows/calculate_contamination_workflow.cwl Branch/Commit ID: master |
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LSU-from-tablehits.cwl
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: tools/LSU-from-tablehits.cwl Branch/Commit ID: master |
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functional analysis prediction with InterProScan
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/functional_analysis.cwl Branch/Commit ID: master |
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format-maf
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/portal-formatting.cli/1.0.0/format-maf.cwl Branch/Commit ID: 2.4.x |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_manta.cwl Branch/Commit ID: 3bb03c9b |
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ValidateTelescopeShadowing
Validate shadowing from masts, camera housing, and other structural elements. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateTelescopeShadowing.cwl Branch/Commit ID: main |
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md5sum.cwl
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https://github.com/denis-yuen/dockstore-workflow-md5sum-unified.git
Path: md5sum/md5sum.cwl Branch/Commit ID: 1.6.0 |
