Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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03-map-pe.cwl
ATAC-seq 03 mapping - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl Branch/Commit ID: v1.0.0 |
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ChIPseq_spike_in.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflows/ChIPseq_spike_in.cwl Branch/Commit ID: master |
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qiime2 identify differentially abundant features
Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-09-ancom.cwl |
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cnv_codex
CNV CODEX calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_codex.cwl Branch/Commit ID: 3bb03c9b |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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VIRTUS.PE.singlevirus.cwl
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https://github.com/yyoshiaki/VIRTUS.git
Path: workflow/VIRTUS.PE.singlevirus.cwl Branch/Commit ID: master |
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Chipseq alignment for nonhuman with qc and creating homer tag directory
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/chipseq_alignment_nonhuman.cwl Branch/Commit ID: low-vaf |
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Detect Variants workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: No_filters_detect_variants |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: assembly |
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scatter-valuefrom-wf2.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-valuefrom-wf2.cwl Branch/Commit ID: master |
