Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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workflow.cwl
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https://github.com/mr-c/cwltests.git
Path: cwl/workflow.cwl Branch/Commit ID: pack_test |
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5S-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/5S-from-tablehits.cwl Branch/Commit ID: 43d2fb8 |
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bwameth_singlelib.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/bwameth/bwameth_singlelib.cwl Branch/Commit ID: 1416ade270d1b990087e39c6680464c12cf564cc |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 2d851682ba1bf2aaaacb3677253b55ceb59c8568 |
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io-file-default-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/io-file-default-wf.cwl Branch/Commit ID: main |
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cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/cnv_gridss.cwl Branch/Commit ID: 3bb03c9b |
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rw-flow.cwl
run multiple rw stages sequentially using earlier step output as later stage input_bam |
https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/rw-flow.cwl Branch/Commit ID: master |
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wf_full_IDR_pipeline_1input_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_1input_scatter.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 5833078 |
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standard_pipeline.cwl
This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2 |
https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/standard_pipeline.cwl Branch/Commit ID: master |
