Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph tRNA_selection.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 5833078
workflow graph test-workflow-from-SRA-Run-id.cwl

https://github.com/hacchy1983/CWL-workflows.git

Path: Workflows/test-workflow-from-SRA-Run-id.cwl

Branch/Commit ID: master
workflow graph pcawg_minibam_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: master
workflow graph wf_input_norm_and_entropy.cwl

This workflow normalizes clip aligned reads against a size-matched input sample. Then, an entropy score is calculated for each peak found.

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_input_norm_and_entropy.cwl

Branch/Commit ID: master
workflow graph bgzip and index VCF

https://github.com/genome/cancer-genomics-workflow.git

Path: varscan/bgzip_and_index.cwl

Branch/Commit ID: toil_compatibility
workflow graph 01-qc-pe.cwl

STARR-seq 01 QC - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: master
workflow graph cond-wf-010.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-010.cwl

Branch/Commit ID: main
workflow graph gp_makeblastdb

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: dev
workflow graph blast2tree_v2.cwl

blastp, awk, blastdbcmd, clustalo, and fasttreeの5つのステップを実行

 https://github.com/yonesora56/togotv_cwl_for_remote_container.git

Path: zatsu_cwl_bioinformatics/blast2tree_v2.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/germline_exome.cwl

Branch/Commit ID: No_filters_detect_variants