Workflow: bgzip and index VCF
Fetched 2024-04-25 10:02:23 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| vcf | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| bgzip |
../detect_variants/bgzip.cwl
(CommandLineTool)
|
bgzip VCF | |
| index |
../detect_variants/index_vcf.cwl
(CommandLineTool)
|
vcf index |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| indexed_vcf | File |
Permalink:
https://w3id.org/cwl/view/git/d1ee6a2a323cee7e4af00c7e0b926c2192038e1d/varscan/bgzip_and_index.cwl
