Workflow: blast2tree_v2.cwl
Fetched 2026-04-14 21:06:59 GMT
Verified with cwltool version 3.1.20230201224320
blastp, awk, blastdbcmd, clustalo, and fasttreeの5つのステップを実行
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
The Unlicense
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| 3_evalue | Float |
blastp process evalue cutoff |
|
| 1_protein_query | File |
blastp process input protein query file(fasta format) |
|
| 5_outformat_type | Integer |
blastp process output format type |
|
| 2_protein_database | File |
blastp process input all index file |
|
| 6_output_file_name | String |
blastp process output file name |
|
| 4_number_of_threads | Integer |
number of threads |
|
| 7_max_target_sequence | Integer |
blastp process max target sequence |
|
| 9_clustalo_output_name | String |
clustalo process output name |
|
| 8_blastdbcmd_protein_database | File |
blastdbcmd process protein database |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| step2_awk |
2_awk_v2.cwl
(CommandLineTool)
|
||
| step1_blastp |
1_blastp_docker_v5.cwl
(CommandLineTool)
|
||
| step4_clustalo |
4_clustalo_docker_v2.cwl
(CommandLineTool)
|
||
| step5_fasttree |
5_fasttree_docker.cwl
(CommandLineTool)
|
||
| step3_blastdbcmd |
3_blastdbcmd_docker_v3.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| awk_output | File |
awk output |
|
| blastp_output | File |
blastp output |
|
| clustalo_output | File |
clustalo output |
|
| fasttree_output | File |
final output file |
|
| blastdbcmd_output | File |
blastdbcmd output |
Permalink:
https://w3id.org/cwl/view/git/4aa7ab4e4f8eed6b676ea04c53afd3fe57d2ca7b/zatsu_cwl_bioinformatics/blast2tree_v2.cwl
