Explore Workflows

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 0fed1c9

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/blast.cwl

Branch/Commit ID: main

https://github.com/tammojan/dpppcwl.git

Path: ndppp-pipeline.cwl

Branch/Commit ID: master

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: f993cad

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_male_chrXY_wXTR.cwl

Branch/Commit ID: master

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.wBQSR.cwl

Branch/Commit ID: master

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: No_filters_detect_variants

The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: master

https://github.com/common-workflow-library/bio-cwl-tools.git

Path: bwa/BWA-Mem2-paired.cwl

Branch/Commit ID: release

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-08-taxonomic-analysis.cwl