Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph contamination_foreign_chromosome

This workflow detect and remove foreign chromosome from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/contamination-foreign-chromosome-blastn.cwl

Branch/Commit ID: master
workflow graph Dockstore.cwl

https://github.com/kathy-t/ghapps-single-workflow.git

Path: Dockstore.cwl

Branch/Commit ID: annotated-tag-3
workflow graph count-lines6-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines6-wf.cwl

Branch/Commit ID: main
workflow graph Varscan Workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: varscan/workflow.cwl

Branch/Commit ID: master
workflow graph emblem_textures.cwl

https://gitlab.com/unduthegun/stellaris-emblem-lab.git

Path: textures/emblem_textures.cwl

Branch/Commit ID: master
workflow graph textures.cwl

Create emblem textures

 https://github.com/undu/stellaris-emblem-lab.git

Path: textures/textures.cwl

Branch/Commit ID: cwl
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph checkm_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_checkm_wnode.cwl

Branch/Commit ID: master
workflow graph retrieve metadata from Zenodo community

For a given Zenodo community, retrieve its repository records as Zenodo JSON and (eventually) schema.org JSON-LD and DataCite v4 XML.

https://github.com/stain/ro-index-paper.git

Path: code/data-gathering/workflows/zenodo-records.cwl

Branch/Commit ID: master
workflow graph rMATS_bam_packed.cwl

https://github.com/Xinglab/rmats-turbo.git

Path: cwl/rMATS_bam_packed.cwl

Branch/Commit ID: master