Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph dfast-filelist-outputdir.cwl

https://github.com/nigyta/bact_genome.git

Path: cwl/workflow/dfast-filelist-outputdir.cwl

Branch/Commit ID: master
workflow graph salmon_wf_se.cwl

https://github.com/pitagora-network/pitagora-cwl.git

Path: workflows/salmon/single_end/salmon_wf_se.cwl

Branch/Commit ID: master
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/andurill/access-pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph canine_gatk_cnv_module.cwl

https://github.com/d3b-center/canine-dev.git

Path: subworkflows/canine_gatk_cnv_module.cwl

Branch/Commit ID: master
workflow graph wf_get_peaks_trim_partial_scatter_se.cwl

https://github.com/YeoLab/eclip.git

Path: cwl/wf_get_peaks_trim_partial_scatter_se.cwl

Branch/Commit ID: master
workflow graph Apply filters to VCF file

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/filter_vcf_nonhuman.cwl

Branch/Commit ID: low-vaf
workflow graph Instac stage-in

Stage-in using Instac

 https://github.com/EOEPCA/app-vegetation-index.git

Path: instac.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph Create Genomic Collection for Bacterial Pipeline

https://github.com/ncbi/pgap.git

Path: genomic_source/wf_genomic_source.cwl

Branch/Commit ID: 9144d08fa7f4e852498761481dceab477167fa65
workflow graph bulk_process.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_process.cwl

Branch/Commit ID: 5465f66
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/pipelines/pvacseq.cwl

Branch/Commit ID: No_filters_detect_variants