Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: b9c8e26 |
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cnv_gridss
CNV GRIDSS calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl Branch/Commit ID: 1.0.5 |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: c1f8b22 |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1.0.6 |
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ValidateTelescopeSimulationModel
Validate the telescope simulation model as a whole. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateTelescopeSimulationModel.cwl Branch/Commit ID: main |
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count-lines11-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines11-wf-noET.cwl Branch/Commit ID: main |
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contaminant_cleanup
This workflow detect and remove contamination from a DNA fasta file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/Contamination/contaminant-cleanup.cwl Branch/Commit ID: master |
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running cellranger mkfastq and count
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: downsample_and_recall |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: master |
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Transcriptome assembly workflow
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https://github.com/stain/workflow-is-cwl.git
Path: workflows/TranscriptomeAssembly-wf.cwl Branch/Commit ID: avoid-spaces |
