Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wf_run_exemplary_wf.cwl
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https://github.com/BAMresearch/NFDI4IngScientificWorkflowRequirements.git
Path: exemplary_workflow/cwl/wf_run_exemplary_wf.cwl Branch/Commit ID: main |
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gk-load-code-pseudos.cwl
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https://github.com/vdikan/cwl-gk-thermal.git
Path: cwl/gk-load-code-pseudos.cwl Branch/Commit ID: master |
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viralrecon.nanopore.single.cwl
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https://github.com/inutano/viralrecon-cwl.git
Path: nanopore/workflow/viralrecon.nanopore.single.cwl Branch/Commit ID: development |
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rRNA_selection.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 5833078 |
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Unaligned BAM to BQSR and VCF
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https://github.com/markrobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: workflow.cwl_2 |
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QIIME2 Step 1 paired end sequences
QIIME2 Import and Demux Step 1 paired end sequences |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step1-import-demux-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
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pipeline-fastq2vcf.cwl
DNAseq pipeline from fastq to vcf |
https://github.com/Sentieon/Sentieon-cwl.git
Path: pipeline/pipeline-fastq2vcf.cwl Branch/Commit ID: master |
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wgs alignment and germline variant detection
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: No_filters_detect_variants |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 0746e12 |
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oxog_varbam_annotate_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: oxog_varbam_annotate_wf.cwl Branch/Commit ID: 1.0.0 |
