Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bwa_index

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: 1.0.9
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: master
workflow graph tnsnv-distr.cwl

https://github.com/sentieon/sentieon-cwl.git

Path: stage/tnsnv-distr.cwl

Branch/Commit ID: master
workflow graph md_launch.cwl

https://github.com/douglowe/biobb_hpc_cwl_md_list.git

Path: md_launch.cwl

Branch/Commit ID: main
workflow graph 02-trim-pe.cwl

STARR-seq 02 trimming - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: master
workflow graph sc_atac_seq_initial_analysis.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_initial_analysis.cwl

Branch/Commit ID: 68e0cc1
workflow graph exome alignment and somatic variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph ST520101.cwl

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: ST520101.cwl

Branch/Commit ID: main
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/visium-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: main
workflow graph bqsr-flow.cwl

Run BQSR pre+post+plot flow

 https://github.com/sentieon/sentieon-cwl.git

Path: stage/bqsr-flow.cwl

Branch/Commit ID: master