Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph collapsed_fastq_to_bam.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/marianas/collapsed_fastq_to_bam.cwl

Branch/Commit ID: master
workflow graph Compute average of average per cross-mapped famil(y)ies

Compute average structure for all averaged structures corresponding to UniProt domain instances cross-mapped from Pfam/CATH to a CATH/Pfam family. First computes average per UniProt domain instance and then average all averaged structures per Pfam family.

https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git

Path: Tools/other_avg_subwf.cwl

Branch/Commit ID: main
workflow graph chemprodev.cwl

Workflow for the synthesis and purification of 5-methoxytryptamine, based on a series of chemical reactions, extractions, filtrations, and other unit operations.

https://github.com/pascmont/cwltest.git

Path: chemprodev.cwl

Branch/Commit ID: main
workflow graph bed_to_coverage_track.cwl

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflow_modules/bed_to_coverage_track.cwl

Branch/Commit ID: master
workflow graph 5S-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: f6b5196
workflow graph output-arrays-int-wf.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/output-arrays-int-wf.cwl

Branch/Commit ID: master
workflow graph sum-wf-noET.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/sum-wf-noET.cwl

Branch/Commit ID: main
workflow graph oxog_varbam_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git

Path: oxog_varbam_annotate_wf.cwl

Branch/Commit ID: 1.0.0
workflow graph SSU-from-tablehits.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 3f85843
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: downsample_and_recall