Workflow: Compute average of average per cross-mapped famil(y)ies
Fetched 2024-11-26 00:41:04 GMT
Verified with cwltool version 3.1.20230201224320
Compute average structure for all averaged structures corresponding to UniProt domain instances cross-mapped from Pfam/CATH to a CATH/Pfam family. First computes average per UniProt domain instance and then average all averaged structures per Pfam family.
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| pdb_dir | Directory | The directory with (or to store) PDB files | |
| crossmap_file | File[] [JSON] | CATH cross-mapped domin StIs family-wise |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| chop_and_avg_from_list |
5091a02f7206c7ea201f39505c709174
(Workflow)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| averaged_structs | File[] [PDB] | Average structures per passed family with given StIs |
Permalink:
https://w3id.org/cwl/view/git/b5a9d4b025ec8e065bae97eeb96f10db2dd8e1e6/Tools/other_avg_subwf.cwl
