- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Inputs
ID | Type | Title | Doc |
---|---|---|---|
table_hits | File | output of infernal's cmscan or cmsearch |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
grep |
pull-SSUs.cwl
(CommandLineTool)
|
||
extract_coords |
extract-coords-from-cmscan.cwl
(CommandLineTool)
|
The awk script takes the output of Infernal's cm{scan,search} fmt=2 mode and
makes it suitable for use by esl-sfetch, a sequence selector |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
SSU_coordinates | File |
https://w3id.org/cwl/view/git/3f85843d4a6debdabe96bc800bf2a4efdcda1ef3/tools/SSU-from-tablehits.cwl