Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_functional_analysis.cwl Branch/Commit ID: caea457 |
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packed.cwl#main
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https://github.com/mr-c/cwltests.git
Path: cwl/packed.cwl Branch/Commit ID: pack_test Packed ID: main |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: c211071 |
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wgs_variant_calling_bam.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/wgs_variant_calling_bam.cwl Branch/Commit ID: dev |
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bqsr_workflow.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/BQSR/bqsr_workflow.cwl Branch/Commit ID: 0.0.33_dmp |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 8af5a1c |
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kallisto-demo.cwl
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https://github.com/alexbarrera/GGR-cwl.git
Path: workflows/workflows/kallisto-demo.cwl Branch/Commit ID: master |
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exomeseq-01-preprocessing.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-01-preprocessing.cwl Branch/Commit ID: gatk4-fixes |
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Detect Variants workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: low-vaf |
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BD Rhapsody™ WTA Analysis Pipeline
The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.8/rhapsody_wta_1.8.cwl Branch/Commit ID: master Packed ID: main |
