Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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rna amplicon analysis for fasta files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fasta.workflow.cwl Branch/Commit ID: master |
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sum-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/sum-wf.cwl Branch/Commit ID: main |
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Transcripts annotation workflow
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https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: assembly |
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bam-bedgraph-bigwig.cwl
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https://github.com/Barski-lab/ga4gh_challenge.git
Path: subworkflows/bam-bedgraph-bigwig.cwl Branch/Commit ID: v0.0.3 |
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qiime2 identify differentially abundant features
Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-09-ancom.cwl |
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Identifies non-coding RNAs using Rfams covariance models
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https://github.com/hmenager/workflow-is-cwl.git
Path: workflows/cmsearch-multimodel-wf.cwl Branch/Commit ID: master |
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pipeline.cwl
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https://github.com/hubmapconsortium/celldive-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 20ea8da |
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sorter.cwl
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https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git
Path: steps/sorter.cwl Branch/Commit ID: master |
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pipeline-pe-blacklist-removal.cwl
ATAC-seq pipeline - reads: PE - with blacklist removal |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl Branch/Commit ID: master |
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bam-genomecov-bigwig.cwl
creates genome coverage bigWig file from .bam file |
https://github.com/Barski-lab/ga4gh_challenge.git
Path: workflows/bam-genomecov-bigwig.cwl Branch/Commit ID: v0.0.2 |
