Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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QIIME2 Step 2 (DADA2 option)
QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 68e0cc1 |
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scatter-wf3.cwl#main
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/scatter-wf3.cwl Branch/Commit ID: master Packed ID: main |
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main.cwl
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https://github.com/smc-rna-challenge/tnv-7269246.git
Path: main.cwl Branch/Commit ID: master |
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count-lines12-wf.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: master |
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band.cwl
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https://github.com/alpha-unito/cwl-montage-workflow.git
Path: cwl/band.cwl Branch/Commit ID: main |
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wf.cwl#SplitAndSubsample.cwl
SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter. |
https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: main Packed ID: SplitAndSubsample.cwl |
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no-inputs-wf.cwl
Workflow without inputs. |
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/no-inputs-wf.cwl Branch/Commit ID: master |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/picard_markduplicates.cwl Branch/Commit ID: master |
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fillout_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of bam files with a single maf file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/fillout_workflow.cwl Branch/Commit ID: master |
