- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
BSD 3-clause "New" or "Revised" License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
split | Boolean | ||
strand | String | ||
bedgraph | Boolean | ||
input_bam | File | ||
chrom_sizes | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
step_rename |
rename.cwl
(CommandLineTool)
|
||
step_sort_bedgraph |
sort_bedgraph.cwl
(CommandLineTool)
|
||
step_bam_to_bedgraph |
bam_to_bedgraph.cwl
(CommandLineTool)
|
||
step_bedgraphtobigwig |
bedgraphtobigwig.cwl
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
output_bigwig | File | ||
output_bedgraph | File | ||
output_sorted_bedgraph | File |
Permalink:
https://w3id.org/cwl/view/git/5eb7864dd3622552dc95a927d3eb6ccf5f107745/cwl/wf_bam_to_bigwig.cwl