Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: preprocess_vcf.cwl

Branch/Commit ID: develop
workflow graph ChIPseq_spike_in.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/ChIPseq_spike_in.cwl

Branch/Commit ID: master
workflow graph platanusB-w-rRNA.cwl

https://github.com/nigyta/bact_genome.git

Path: cwl/workflow/platanusB-w-rRNA.cwl

Branch/Commit ID: master
workflow graph dynresreq-workflow-inputdefault.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/dynresreq-workflow-inputdefault.cwl

Branch/Commit ID: main
workflow graph snps_and_indels.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/subworkflows/snps_and_indels.cwl

Branch/Commit ID: master
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: 1.0.0
workflow graph kfdrc_flagstat_qc.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/kfdrc_flagstat_qc.cwl

Branch/Commit ID: master
workflow graph marianas_collapsing_workflow.cwl

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/marianas/marianas_collapsing_workflow.cwl

Branch/Commit ID: master
workflow graph SARS_psm_workflow.cwl

https://github.com/adamscharlotte/CWL-workflow.git

Path: SARS_psm_workflow.cwl

Branch/Commit ID: master
workflow graph qc-assembled.workflow.cwl

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/qc-assembled.workflow.cwl

Branch/Commit ID: master