Workflow: functional analysis prediction with InterProScan
Fetched 2024-04-18 09:23:22 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| predicted_CDS | File | ||
| go_summary_config | File |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| chunk_inputs |
../tools/fasta_chunker.cwl
(CommandLineTool)
|
split FASTA by number of records |
based upon code by Maxim Scheremetjew, EMBL-EBI |
| summarize_with_GO |
../tools/go_summary.cwl
(CommandLineTool)
|
||
| combine_annotations |
../tools/concatenate.cwl
(CommandLineTool)
|
||
| functional_analysis |
../tools/InterProScan5.21-60.cwl
(CommandLineTool)
|
InterProScan: protein sequence classifier |
Version 5.21-60 can be downloaded here:
https://github.com/ebi-pf-team/interproscan/wiki/HowToDownload |
| remove_asterisks_and_reformat |
../tools/esl-reformat.cwl
(CommandLineTool)
|
normalize to fasta |
normalizes input sequeces to FASTA with fixed number of sequence characters per line using esl-reformat from https://github.com/EddyRivasLab/easel |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| go_summary | File | ||
| go_summary_slim | File | ||
| functional_annotations | File |
Permalink:
https://w3id.org/cwl/view/git/7bb76f33bf40b5cd2604001cac46f967a209c47f/workflows/functional_analysis.cwl
