Workflow: ProteinInferenceWorkflow.cwl

Fetched 2024-12-03 09:12:54 GMT
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Inputs

ID Type Title Doc
cp File
jar File
bait String
name String
fasta File
mztab File
compiler String
fileType String
paramFile File
xml_output String
idxml_output String
IL_equivalent Boolean
proteinExport String
pia_proteins_R File
allow_unmatched Boolean
mztab_to_csv_py File
mztab_to_idxml_py File
enzyme_specificity String
missing_decoy_action String

Steps

ID Runs Label Doc
pia_run
Tools/pia_run.cwl (CommandLineTool)
pia_xml
Tools/pia_xml.cwl (CommandLineTool)
mztab_to_csv
Tools/mztab_to_csv.cwl (CommandLineTool)
pia_proteins
Tools/pia_proteins.cwl (CommandLineTool)
mztab_to_idxml
Tools/mztab_to_idxml.cwl (CommandLineTool)
peptide_indexer
Tools/peptide_indexer.cwl (CommandLineTool)

Outputs

ID Type Label Doc
pia_proteins File
Permalink: https://w3id.org/cwl/view/git/f165c14d6d2e20a5133fc42251ae565fcbe520f6/ProteinInferenceWorkflow.cwl