Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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filter-pcr-artifacts.cwl
DNase-seq - map - Filter PCR Artifacts |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/map/filter-pcr-artifacts.cwl Branch/Commit ID: master |
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CNV_pipeline
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: 1.0.5 |
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Single-cell Reference Indices
Single-cell Reference Indices Builds a Cell Ranger and Cell Ranger ARC compatible reference folders from the custom genome FASTA and gene GTF annotation files |
https://github.com/Barski-lab/sc-seq-analysis.git
Path: workflows/sc-ref-indices-wf.cwl Branch/Commit ID: main |
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ValidateSinglePhotoElectronResponse
Validate single photon electron response. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateSinglePhotoElectronResponse.cwl Branch/Commit ID: main |
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EMG core analysis for Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-core-analysis-v4.cwl Branch/Commit ID: 1b0851e |
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pipeline.cwl
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https://github.com/hubmapconsortium/azimuth-annotate.git
Path: pipeline.cwl Branch/Commit ID: c2c4f45 |
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wf_paleocar_web-app_data_flow.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/main/wf_paleocar_web-app_data_flow.cwl Branch/Commit ID: master |
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Task2
For CMRxRecon validation |
https://github.com/CmrxRecon/CMRxRecon2024-snippets.git
Path: workflow-task2.cwl Branch/Commit ID: master |
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fillout_index_prefilter.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/fillout_index_prefilter.cwl Branch/Commit ID: master |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: No_filters_detect_variants |
