Bacterial Annotation, ab initio (first pass) searched against AntiFam

Workflow: Bacterial Annotation, ab initio (first pass) searched against AntiFam

Fetched 2025-04-23 10:25:22 GMT

Verified with cwltool version 3.1.20230201224320

This workflow is Open Source and may be reused according to the terms of: https://raw.githubusercontent.com/ncbi/pgap/master/LICENSE.md

Note that the tools invoked by the workflow may have separate licenses.

ID	Type	Title	Doc
models1	File
AntiFamLib	Directory
sequence_cache	Directory
scatter_gather_nchunks	String

ID	Runs	Label
Good_ab_initio_proteins	../progs/set_operation.cwl (CommandLineTool)	set_operation
Extract_ab_initio_Proteins	../progs/protein_extract.cwl (Workflow)	protein_extract
Good_ab_initio_annotations	../progs/bact_filter_preserved.cwl (CommandLineTool)	bact_filter_preserved
Search_ab_initio_for_AntiFam	../task_types/tt_hmmsearch_wnode.cwl (Workflow)
ab_initio_AntiFam_tainted_proteins	../progs/reduce.cwl (CommandLineTool)	reduce

ID	Type	Label	Doc
out_annotation	File

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Permalink: https://w3id.org/cwl/view/git/8ea3637b0f11eac1ea5599c41d74e00d85fb778d/bacterial_annot/wf_ab_initio_antifam.cwl