Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bgzip and index VCF

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bgzip_and_index.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: d71be68
workflow graph EMG pipeline v3.0 (paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: master
workflow graph 05-quantification.cwl

ATAC-seq - Quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/05-quantification.cwl

Branch/Commit ID: master
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: master
workflow graph strelka workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: strelka/workflow.cwl

Branch/Commit ID: master
workflow graph step-valuefrom5-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom5-wf.cwl

Branch/Commit ID: main
workflow graph process VCF workflow

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: master
workflow graph ProGENI

network-guided gene prioritization method implementation by KnowEnG that ranks gene measurements by their correlation to observed phenotypes

 https://github.com/KnowEnG/cwl-gene-prioritization.git

Path: gp_workflow.cwl

Branch/Commit ID: master
workflow graph md5-validate.cwl

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/md5-validate.cwl

Branch/Commit ID: dev2