Workflow: QIIME2 Step 1

Fetched 2024-04-22 22:17:58 GMT

QIIME2 Import and Demux Step 1

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Inputs

ID Type Title Doc
barcodes File

barcodes associated with sequences in FASTQ format

sequences File

single ended sequence reads in FASTQ format

sample_metadata File

Sample metadata in tsv format

metadata_barcodes_column String

name of the column in sample_metadata that contains barcodes

Steps

ID Runs Label Doc
demux qiime2 demux sequences

Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

import_data qiime2 importing data

Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

Outputs

ID Type Label Doc
sequences_artifact File
demux_sequences_artifact File
demux_visualization_artifact File
Permalink: https://w3id.org/cwl/view/git/e2dc95d4f12210359360d814382e7201d836dfcf/packed/qiime2-step1-import-demux.cwl?part=main