Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph bwa_index

Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bwa_index.cwl

Branch/Commit ID: 1.0.5
workflow graph main-pisces-ras.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-lowfreq/pisces-ras-workflow/main-pisces-ras.cwl

Branch/Commit ID: master
workflow graph pipeline-fastq2vcf-distr.cwl

DNAseq pipeline from fastq to vcf in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-fastq2vcf-distr.cwl

Branch/Commit ID: master
workflow graph kfdrc_cram_to_gvcf.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kfdrc_cram_to_gvcf.cwl

Branch/Commit ID: dev
workflow graph Nested workflow example

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/nested.cwl

Branch/Commit ID: main
workflow graph tt_univec_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: test
workflow graph nontrivial.cwl

https://github.com/dockstore-testing/tooltester-wes-testing.git

Path: nontrivial/nontrivial.cwl

Branch/Commit ID: stable-version-for-testing-v3
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: low-vaf
workflow graph chksum_for_corrupted_fastq_files.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_corrupted_fastq_files.cwl

Branch/Commit ID: master
workflow graph pipeline-fastq2vcf.cwl

DNAseq pipeline from fastq to vcf

 https://github.com/Sentieon/Sentieon-cwl.git

Path: pipeline/pipeline-fastq2vcf.cwl

Branch/Commit ID: master