Workflow: unifiedgenotyper.cwl

Fetched 2024-07-19 11:20:52 GMT
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Inputs

ID Type Title Doc
snp_ref File
bam_file File[]
interval File
job_uuid String
reference File

Steps

ID Runs Label Doc
picard_sortvcf
../../tools/variant_calling/picard_sortvcf.cwl (CommandLineTool)
gatk3_unifiedgenotyper
../../tools/variant_calling/gatk3_unifiedgenotyper.cwl (CommandLineTool)

Outputs

ID Type Label Doc
unifiedgenotyper_sorted_vcf File
time_metrics_from_picard_sortvcf File
time_metrics_from_gatk3_unifiedgenotyper File
Permalink: https://w3id.org/cwl/view/git/13c106834d6c9031de08496faeff521740a0c95f/genomel/cwl/workflows/variant_calling/unifiedgenotyper.cwl