Workflow: trimmed_fastq

Fetched 2024-04-23 05:01:30 GMT

Quality Control (raw data), Raw Data trimming and Quality Control (pre-processed)

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Inputs

ID Type Title Doc
fastq1 File[]
fastq2 File[]
threads_fastp Integer (Optional)
threads_fastqc Integer (Optional)

Steps

There are no steps in this workflow

Outputs

ID Type Label Doc
paired_R1 File[]
paired_R2 File[]
html_report File[]
json_report File[]
unpaired_R1 File[]
unpaired_R2 File[]
fastqc_raw_zip File[]
fastqc_raw_html File[]
fastqc_paired_zip File[]
fastqc_paired_html File[]
Permalink: https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/abstract_operations/subworkflows/trimmed_fastq.cwl