Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: No_filters_detect_variants |
|
|
|
sgseq_cwl.cwl
|
https://github.com/rdocking/sgseq_cwl.git
Path: cwl/sgseq_cwl.cwl Branch/Commit ID: master |
|
|
|
chksum_for_a_corrupted_xam_file.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_a_corrupted_xam_file.cwl Branch/Commit ID: 0.5.1 |
|
|
|
tmb_workflow.cwl
Workflow to run the TMB analysis on a batch of samples and merge the results back into a single data clinical file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/tmb_workflow.cwl Branch/Commit ID: master |
|
|
|
broad-best-practice-data-pre-processing-workflow-4-1-0-0_decomposed.cwl
|
https://github.com/sevenbridges-openworkflows/Broad-Best-Practice-Data-pre-processing-CWL1.0-workflow-GATK-4.1.0.0.git
Path: broad-best-practice-data-pre-processing-workflow-4-1-0-0_decomposed.cwl Branch/Commit ID: master |
|
|
|
kf-cram2gvcf_calc_contam.cwl
|
https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/kf-cram2gvcf_calc_contam.cwl Branch/Commit ID: dev |
|
|
|
workflow1_11.cwl#SplitAndSubsample.cwl
SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter. |
https://github.com/GeorgeAlehandro/cwl_1_11.git
Path: workflow1_11.cwl Branch/Commit ID: main Packed ID: SplitAndSubsample.cwl |
|
|
|
workflow.cwl
|
https://github.com/inab/ipc_workflows.git
Path: exome/alignment/workflow.cwl Branch/Commit ID: main |
|
|
|
SSU-from-tablehits.cwl
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 3039744 |
|
|
|
QIIME2 Step 2 (DADA2 option)
QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom |
https://github.com/bespin-workflows/16s-qiime2.git
Path: 16s-step2-dada2-paired.cwl Branch/Commit ID: develop |
