Workflow: cmsearch-multimodel.cwl
Fetched 2024-10-11 02:35:29 GMT
Verified with cwltool version 3.1.20221201130942
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Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| clan_info | File | ||
| query_sequences | File | ||
| covariance_models | File[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| cmsearch |
../tools/infernal-cmsearch.cwl
(CommandLineTool)
|
search sequence(s) against a covariance model database |
http://eddylab.org/infernal/Userguide.pdf |
| remove_overlaps |
../tools/cmsearch-deoverlap.cwl
(CommandLineTool)
|
remove lower scoring overlaps from cmsearch --tblout files. |
https://github.com/nawrockie/cmsearch_tblout_deoverlap/blob/master/00README.txt |
| concatenate_matches |
../tools/concatenate.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| matches | File |
Permalink:
https://w3id.org/cwl/view/git/c2110714be230861ee7b96adc3db6e32e5248c57/workflows/cmsearch-multimodel.cwl
