Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Filter single sample sv vcf from depth callers(cnvkit/cnvnator)

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sv_depth_caller_filter.cwl

Branch/Commit ID: master
workflow graph wf_rnaediting2strands.cwl

https://github.com/YeoLab/sailor.git

Path: cwl/wf_rnaediting2strands.cwl

Branch/Commit ID: master
workflow graph qc.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/qc.cwl

Branch/Commit ID: master
workflow graph final_filtering

Final filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/final_filtering.cwl

Branch/Commit ID: 1.0.6
workflow graph rRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: d3b8e45
workflow graph bam to trimmed fastqs

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl

Branch/Commit ID: downsample_and_recall
workflow graph wf52.cwl

https://github.com/NCATS-Tangerine/ros.git

Path: ros/wf5/wf52.cwl

Branch/Commit ID: master
workflow graph umi molecular alignment fastq workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_umi_molecular.cwl

Branch/Commit ID: master
workflow graph rnaediting1strand.cwl

https://github.com/YeoLab/sailor.git

Path: CWL-SINGULARITY-pipeline-building-code/cwl/rnaediting1strand.cwl

Branch/Commit ID: 6f21086
workflow graph contig construction and protein prediction

\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/06_bwa_mem.cwl ./Tools/07_samtools_sort.cwl ./Tools/08_samtools_flagstat.cwl\"

https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git

Path: Workflow/metagenomic_contig_mapping_sw.cwl

Branch/Commit ID: main