Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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prefetch_fastq.cwl
Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd |
https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git
Path: bio-cwl-tools/sratoolkit/prefetch_fastq.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: f6b5196 |
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collate_unique_SSU_headers.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: 3f85843 |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 9c57dba |
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nested.cwl
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https://github.com/giannisdoukas/CWLJNIKernel.git
Path: tests/cwl/nested.cwl Branch/Commit ID: master |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl Branch/Commit ID: 1.0.9 |
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CRAM_md5sum_checker_wrapper.cwl
This wraps the md5sum tool with a checker workflow that runs both the tool and a tool that performs verification of results |
https://github.com/DataBiosphere/topmed-workflows.git
Path: CRAM-no-header-md5sum/CRAM_md5sum_checker_wrapper.cwl Branch/Commit ID: 1.24.0 |
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iwdr_with_nested_dirs.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/iwdr_with_nested_dirs.cwl Branch/Commit ID: master |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: test |
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AccceptParameter
accept a simulation model parameter (or set of parameters) as validated and to be used in future MC productions. |
https://github.com/gammasim/workflows.git
Path: workflows/AccceptParameter.cwl Branch/Commit ID: main |
