Workflow: Get Proteins
Fetched 2025-10-29 23:02:18 GMT
Verified with cwltool version 3.1.20230201224320
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
https://raw.githubusercontent.com/ncbi/pgap/dev/LICENSE.md
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| taxid | Integer | ||
| blastdb_dir | Directory | ||
| tax_sql_file | File | ||
| naming_sqlite | File | ||
| uniColl_asn_cache | Directory | ||
| all_order_specific_blastdb | String[] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| File2Basenames |
progs/file2basenames.cwl
(ExpressionTool)
|
||
| Get_Proteins_app |
protein_alignment/bacterial_prot_src.cwl
(CommandLineTool)
|
Get Proteins, bacterial_prot_src |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| all_prots | File | ||
| selected_blastdb | String[] | ||
| universal_clusters | File |
Permalink:
https://w3id.org/cwl/view/git/ed27a47e80a85c76cb7285a78965d59537f79f10/wf_bacterial_prot_src.cwl
