Workflow: FragPipe: TMT Integrator and QC

Fetched 2024-07-19 01:57:43 GMT

This workflow step executes TMT-Integrator using the report tables generated by Philosopher. The program applies a series of statistical filters, and high-quality thresholds to filter the data. Summary report tables are created containing peptides, proteins, genes, and phosphosites (only for phospho-enriched data sets).

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Inputs

ID Type Title Doc
database File
psm_file File[]

Steps

There are no steps in this workflow

Outputs

ID Type Label Doc
tmt_qc_report File (Optional) TMT QC Report
all_report_files File[] (Optional)
Permalink: https://w3id.org/cwl/view/git/080063b7443c98bc378935e16f747f8c542c9521/FragPipe-TMT-Integrator-and-QC/fragpipe-tmt-integrator-and-qc.cwl