Explore Workflows
View already parsed workflows here or click here to add your own
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Subworkflow to allow calling different SV callers which require bam files as inputs
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Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: downsample_and_recall |
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fillout_index_prefilter.cwl
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Path: cwl/fillout_index_prefilter.cwl Branch/Commit ID: master |
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contig LCA
create LCA consistant across input contigs contigs order of precedence - rRNA, single copy gene, LCA of genes |
Path: CWL/Workflows/contig-lca.workflow.cwl Branch/Commit ID: master |
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gdc_dnaseq_main_workflow.cwl
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Path: subworkflows/main/gdc_dnaseq_main_workflow.cwl Branch/Commit ID: master |
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BD Rhapsody™ WTA Analysis Pipeline
The BD Rhapsody™ WTA Analysis Pipeline is used to create sequencing libraries from single cell transcriptomes without having to specify a targeted panel. After sequencing, the analysis pipeline takes the FASTQ files, a reference genome file and a transcriptome annotation file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
Path: v1.8/rhapsody_wta_1.8.cwl Branch/Commit ID: master Packed ID: main |
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snps_and_indels.cwl
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Path: workflows/subworkflows/snps_and_indels.cwl Branch/Commit ID: master |
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snapanalysis_setup_and_analyze.cwl
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Path: steps/snapanalysis_setup_and_analyze.cwl Branch/Commit ID: 102d8cb |
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SSU-from-tablehits.cwl
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Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: ca6ca613 |
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main-vg.cwl
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Path: workflows/variant-calling/main-vg.cwl Branch/Commit ID: main |
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EMG assembly for paired end Illumina
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Path: workflows/emg-assembly.cwl Branch/Commit ID: ca6ca613 |
